PUBLICATIONS & DATA
Genomic and proteomic data can be accessed by following the links provided in the Data column on this page or through the Katze Lab Informatics Server.
For questions about or assistance with data access, please contact: help@macaque.org.
| Authors | Title | Citation | Data |
| 2009 | |||
| Baskin, C.R., H. Bielefeldt-Ohmann, T.M. Tumpey, P.J. Sabourin, J.P. Long, A. García-Sastre, A.-E. Tolnay, R. Albrecht, J.A. Pyles, P. Olson, L.D. Aicher, E.R. Rosenzweig, M.K. Kaja, E.E. Clark, M.S. Kotur, J.L. Fornek, S. Proll, R.E. Palermo, C.L. Sabourin, and M.G. Katze | Early and sustained innate immune response defines pathology and death in highly pathogenic influenza-infected nonhuman primates | Proc. Natl. Acad. Sci. USA 106:3455-3460 | |
| Chan, E.Y., J.N. Sutton, J.M. Jacobs, A. Bondarenko, and M.G. Katze | Dynamic host energetics and cytoskeletal proteomes in HIV-1-infected human primary CD4 cells: analysis by multiplexed label-free mass spectrometry | J. Virol.83:9283-9295 | |
| Cilloniz, C., K. Shina, X. Peng, M.J. Korth, S.C. Proll, L.D. Aicher, V.S. Carter, J.H. Chang, D. Kobasa, F. Feldmann, J.E. Strong, H. Feldmann, Y. Kawaoka, and M.G. Katze | Lethal influenza virus infection in macaques is associated with early disregulation of inflammatory related genes | PLoS Pathog. 5:e100604 | |
| Degenhardt, J.D., P. de Candia, A. Chabot, S. Schwartz, L. Henderson, B. Ling, M. Hunter, Z. Jiang, R.E. Palermo, M.G. Katze, E.E. Eichler, M. Ventura, J. Rogers, P. Marx, Y. Gilad, and C.D. Bustamante | Copy number variation of CCL3-like genes affects rate of progression to simian AIDS in rhesus macaques (Macaca mulatta) | PLoS Genet. 5:e1000346 | |
| de Lang, A., T. Baas, S.L. Smits, M.G. Katze, A.D.M.E. Osterhaus, and B.L. Haagmans | Unraveling the complexities of the interferon response during SARS-CoV infection | Future Virol. 4:71-78 | |
| Favre, D., S. Lederer, B. Kanwar, Z.M. Ma, S. Proll, Z. Kasakow, J. Mold, L. Swainson, J.D. Barbour, C.R. Baskin, R. Palermo, C.J. Miller, M.G. Katze, and J.M. McCune | Critical loss of the balance between Th17 and T regulatory cell populations in pathogenic SIV infection | PLoS Pathog. 5:e1000295 | |
| Lederer, S., D. Favre, K.-A. Walters, S. Proll, B. Kanwar, Z. Kasakow, C.R. Baskin, R. Palermo, J.C. McCune, and M.G. Katze | Transcriptional profiling reveals significant distinctions in kinetics and tissue compartmentalization between pathogenic and nonpathogenic SIV infection | PLoS Pathog. 5:e1000296 | |
| Peng, X., E.C. Chan, Y. Li, D.L. Diamond, M.J. Korth, and M.G. Katze | Virus-host interactions: from systems biology to translational research | Curr. Op. Microbiol.12:432-438 | |
| Tisoncik, J.R., S.E. Belisle, D.L. Diamond, M.J. Korth, and M.G. Katze | Is systems biology the key to preventing the next pandemic? | Future Virol. In press. | 2008 TOP |
| Katze, M.G., J.L. Fornek, R.E. Palermo, K.-A. Walters, and M.J. Korth | Innate immune modulation by RNA viruses: emerging insights from functional genomics | Nat. Rev. Immunol. 8:644-654 | |
| 2007 TOP | |||
| Baskin, C.R., H. Bielefeldt-Ohmann, A. Garcia-Sastre, T.M. Tumpey, N. Van Hoeven, V.S. Carter, M.J. Thomas, S. Proll, A. Solorzano, R. Billharz, J.L. Fornek, S. Thomas, C.H. Chen, E.A. Clark, M.K. Kaja, and M.G. Katze | Functional genomic and serological analysis of the protective immune response resulting from vaccination of macaques with an NS1-truncated influenza virus | J. Virol. 81:11817-11827 | Informatics Server | Chan, E. Y., W. J. Qian, D. L. Diamond, T. Liu, M. A Gritsenko, M. E. Monroe, D. G. Camp, R. D. Smith, and M. G. Katze | Quantitative analysis of HIV-1 infected CD4+ cell proteome: dysregulated cell cycle progression and nuclear transport coincide with robust virus production. | J. Virol. 81:7571-7583 | Informatics Server |
| de Lang, A., T. Baas, T. Teal, L. M. Leijten, B. Rain, A. D. Osterhaus, B. L. Haagmans, and M. G. Katze | Functional genomics highlights differential induction of antiviral pathways in the lungs of SARS-CoV-infected macaques | PloS Pathog. 3:e112 | Informatics Server |
| Li, Y., E. Y. Chan, and M. G. Katze | Functional genomics analyses of differential macaque peripheral blood mononuclear cell infections by human immunodeficiency virus-1 and simian immunodeficiency virus. | Virology 366:137-149 | Informatics Server |
| Gibbs, R., J. Rogers, M. G. Katze, et al. | Evolutionary and biomedical insights from the rhesus macaque genome. | Science 316:222-234 | Genome Project |
| Kobasa, D., S. M. Jones, K. Shinya, J. C. Kash, J. Copps, H. Ebihara, Y. Hatta, J. H. Kim, P. Halfmann, M. Hatta, F. Feldmann, J. B. Alimonti, L. Fernando, Y. Li, M. G. Katze, H. Feldmann, and Y. Kawaoka | Aberrant innate immune response in lethal infection of macaques with the 1918 influenza virus. | Nature 445:319-323 | Informatics Server Array Express |
| Wallace, J. C., M. J. Korth, B. W. Paeper, S. C. Proll, M. J. Thomas, C. L. Magness, S. P. Iadonato, C. Nelson, and M. G. Katze | High-density rhesus macaque oligonucleotide microarray design using early-stage rhesus genome sequence information and human genome annotations | BMC Genomics 8:28 | Informatics Server Array Express |
| 2006 TOP | |||
| Baas, T., C. R. Baskin, D. L. Diamond, A. Garcia-Sastre, H. Bielefeldt-Ohmann, T. M. Tumpey, M. J. Thomas, V. S. Carter, T. H. Teal, N. Van Hoeven, S. C. Proll, J. M. Jacobs, Z. R. Caldwell, M. A. Gritsenko, R. R. Hukkanen, D. G. Camp, R. D. Smith,and M. G. Katze | Integrated molecular signature of disease: analysis of influenza virus-infected macaques through functional genomics and proteomics. | J. Virol. 80:10813-10828 | Informatics Server NCRR Proteomics |
| Thomas M. J., Flanary L. R., Brown B. A., Katze M. G., Baskin C. R. | Use of human nasal cannulas during bronchoscopy procedures as a simple method for maintaining adequate oxygen saturation in pigtailed macaques (Macaca nemestrina). | J. Am. Assoc. Lab Anim. Sci. 45:44-8 | |
| Korth, M. J., J. C. Kash, C. R. Baskin, and M. G. Katze | Insights into influenza virus-host interactions through global gene expression profiling: cell culture systems to animal models. | p. 341-360. In: Y. Kawaoka (ed.), Contemporary topics in influenza virology. Horizon Scientific Press, Wymondham, U.K. | |
| Thomas, M. J., M. B. Agy, S. C. Proll, B.W. Paeper, Y. Li, K. L. Jensen, M. J. Korth, and M. G. Katze | Functional gene analysis of individual response to challenge of SIVmac239 in Macaca mulatta peripheral blood mononuclear cells. | Virology 348:242-52 | Informatics Server |
| 2005 TOP | |||
| Magness, C.L., P.C. Fellin, M.J. Thomas, M.J. Korth, M.B. Agy, S.C. Proll, M. Fitzgibbon, C.S. Scherer, D.G. Miner, M.G. Katze, and S.P. Iadonato | Analysis of the Macaca mulatta transcriptome and the sequence divergence between Macaca and human. | Genome Biol. 6:R60 | Informatics Server Array Express |
| 2004 TOP | |||
| Baskin, C. R., A. Garcia-Sastre, T. M. Tumpey, H. Bielefeldt-Ohmann, V. S. Carter, E. Nistal-Villan, and M. G. Katze | Integration of clinical data, pathology, and cDNA microarrays in influenza virus-infected pigtailed macaques (Macaca nemestrina). | J. Virol. 78:10420-10432 | Informatics Server |